NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228650_1000895

Scaffold Ga0228650_1000895


Overview

Basic Information
Taxon OID3300024417 Open in IMG/M
Scaffold IDGa0228650_1000895 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 62D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11382
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (25.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022286Metagenome / Metatranscriptome215Y

Sequences

Protein IDFamilyRBSSequence
Ga0228650_10008951F022286N/ALYYDPEFEKEVDKIVDLGGKHLGSGDYGSAYLLNGRVYKVTTDEIELEHAEILKGKKTNNFARIYEVEVINPKLGIIQMEVLGEFRGEIPDEWVENVNREAEQHGIDPDELDIRPSNIMVNQKNNLKLVDI
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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