NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0196960_10010896

Scaffold Ga0196960_10010896


Overview

Basic Information
Taxon OID3300024426 Open in IMG/M
Scaffold IDGa0196960_10010896 Open in IMG/M
Source Dataset NameSoil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2290
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Desert → Soil → Systems Level Insights Into Methane Cycling In Arid And Semi-Arid Ecosystems

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.305Long. (o)-116.2547Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004903Metagenome / Metatranscriptome419Y
F006090Metagenome382Y

Sequences

Protein IDFamilyRBSSequence
Ga0196960_100108962F004903GAGGMSRYLQKISLKPYSDAEIWTGWELENRTGELSGLICADGMSPEELLSKYGVTEFQQIPREYLEAGEFRPKEG
Ga0196960_100108964F006090N/AMSLLMQGKASATAPRLDGKEVLTGPDPSIARVKGVMFGARKQFLMDALGEAGFAEFVEKLSPRTRGYVRTPLASAWWEFESLIELDRAIFNELKSKHPNVLALIGAASAELGIGRIYRSLDSESLVQFLESNALFHDQYQKFGNVHFEKTPNGARMVYSNYPVHSPVFCASAVGYFMESILRHGGTNPAVSETKCQCHGDKTCTFEMSWR
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