Scaffold Ga0209991_10001096

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209991_10001096

Scaffold Ga0209991_10001096

Overview

Basic Information
Taxon OID	3300024429 Open in IMG/M
Scaffold ID	Ga0209991_10001096 Open in IMG/M
Source Dataset Name	Deep subsurface microbial communities from South Pacific Ocean to uncover new lineages of life (NeLLi) - Chile_00310 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	12230
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (46.15%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location Name	South Pacific Ocean
Coordinates	Lat. (^o)	-44.283	Long. (^o)	-75.865	Alt. (m)		Depth (m)	3285
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F104424	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209991_100010967	F104424	GAGG	LIEEENNFLEFLKYQITQKNKFEHIVRKIPLFKSMIQERHKTILKMINKFEDVRRREVYNMLVHEFNTVSKRI

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