NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209991_10129349

Scaffold Ga0209991_10129349


Overview

Basic Information
Taxon OID3300024429 Open in IMG/M
Scaffold IDGa0209991_10129349 Open in IMG/M
Source Dataset NameDeep subsurface microbial communities from South Pacific Ocean to uncover new lineages of life (NeLLi) - Chile_00310 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1260
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location NameSouth Pacific Ocean
CoordinatesLat. (o)-44.283Long. (o)-75.865Alt. (m)Depth (m)3285
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F068394Metagenome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0209991_101293491F068394AGGMNLEEKIKSQRIIIAIALILMSLISFDFAIKGTLPIISFIIGLAFLGMALFLLFGLKRKHTGE

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