NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0196962_10000081

Scaffold Ga0196962_10000081


Overview

Basic Information
Taxon OID3300024430 Open in IMG/M
Scaffold IDGa0196962_10000081 Open in IMG/M
Source Dataset NameSoil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)65456
Total Scaffold Genes68 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)65 (95.59%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Desert → Soil → Systems Level Insights Into Methane Cycling In Arid And Semi-Arid Ecosystems

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.305Long. (o)-116.2547Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003047Metagenome510Y
F060326Metagenome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0196962_1000008146F060326AGAAGGMVRRNIGTVLVAAAVTVLLLVAYVLARAQHKLPELGLDLLVYLFATTLAVFVIGRILDWREKRRWEVAEDWLYVILLETIDDLLKVLLPAAVPREGADEEVTVYEVAGERIHFGETVAYSPLRLFVSPGEKDLQSHILWYASELGPPRYAESARAALSDARAQVRDMLATSGQLLEADITAMVMSFDQAVAAAIRHVDSAASMRNEKAEDSTFQDGGLSTTQRTSEADQELTFVSSIIVESVVDSAIKPKAWLETELVNREGRSPFRRLRT
Ga0196962_1000008166F003047AGGAGVTNDALIEEINAAYRRLGAATEDLASADRELAEYVRRVRLDNAEAILEARNERTASLYLDGLLDTHDHRRLEADRARADLALLHARREVERLQLIVRLLGTRPSEGIPG
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