NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0196962_10000310

Scaffold Ga0196962_10000310


Overview

Basic Information
Taxon OID3300024430 Open in IMG/M
Scaffold IDGa0196962_10000310 Open in IMG/M
Source Dataset NameSoil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22575
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (85.19%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Desert → Soil → Systems Level Insights Into Methane Cycling In Arid And Semi-Arid Ecosystems

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.305Long. (o)-116.2547Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000651Metagenome / Metatranscriptome959Y
F001016Metagenome805Y
F004217Metagenome / Metatranscriptome448Y

Sequences

Protein IDFamilyRBSSequence
Ga0196962_100003103F001016GGGGGVGPQDPKDVIRDTSRDLSGLAGELAALKADARHWLTSPEYAVLHLRLENAHAAVEAALVEARRRVRMNEERGKPQGL
Ga0196962_100003104F004217GGAGGMEPDEAEFRAANERIRAMAEELRKAELVRDGLEGLARLMGSYPEGHNMRARLESLHVDRALEGVDEDIRVLTDAIQHPRAVPERLRGC
Ga0196962_100003105F000651AGGAGVYEPITLEVDRASGEGTYRSYSLYFVGRLIRIVEAGHTKMSLYEWADLGRLLYLVHVEEDKPGRPPRRTLYPFINTHSGAGTPRKGYTAEEVSRAYPEFGAEKLLRLARN
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