NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0196962_10000367

Scaffold Ga0196962_10000367


Overview

Basic Information
Taxon OID3300024430 Open in IMG/M
Scaffold IDGa0196962_10000367 Open in IMG/M
Source Dataset NameSoil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19524
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (81.82%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Desert → Soil → Systems Level Insights Into Methane Cycling In Arid And Semi-Arid Ecosystems

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.305Long. (o)-116.2547Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005569Metagenome / Metatranscriptome396Y
F016874Metagenome244Y

Sequences

Protein IDFamilyRBSSequence
Ga0196962_1000036716F005569AGGAGGVDERDARRNREASERLDRLAREGYKAAVDQAFEAQKSGMRLSRRFFENWVETLDDQAELNRRTLGSLQQLAREQSEVFRALSRESVDAYDGFLDSLDAYQQDISKLQERDD
Ga0196962_100003679F016874AGGMLRLVAMVLFGLMFLAEAGDIYGLVLTLADPGPTADRFGITAGAEVLRSTVLLMLALVVFFGALLALVGLFARKPELFHTSALVCAIGYLVYGLIQVADGALQLGSAIVVVAGLIYVVLGGLAYAMYRTAFKL
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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