Basic Information | |
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Taxon OID | 3300024430 Open in IMG/M |
Scaffold ID | Ga0196962_10031856 Open in IMG/M |
Source Dataset Name | Soil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_20 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1581 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Sand → Desert → Soil → Systems Level Insights Into Methane Cycling In Arid And Semi-Arid Ecosystems |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: California | |||||||
Coordinates | Lat. (o) | 33.305 | Long. (o) | -116.2547 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F005569 | Metagenome / Metatranscriptome | 396 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0196962_100318562 | F005569 | AGGAGG | MDEKDHRRAERAAEELDRLARESYSAAVDRAFEVQRSGIRLSRRFFEDWVENLEDHAELNRRMMQDLTELVREQREVFQQLSHESLDAYDGFVDSLSAYYDEVAEDHEN |
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