NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209977_10001455

Scaffold Ga0209977_10001455


Overview

Basic Information
Taxon OID3300024432 Open in IMG/M
Scaffold IDGa0209977_10001455 Open in IMG/M
Source Dataset NameDeep subsurface microbial communities from Indian Ocean to uncover new lineages of life (NeLLi) - Sumatra_00607 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10393
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (73.68%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location Namenear North Sumatra
CoordinatesLat. (o)1.759Long. (o)96.774Alt. (m)Depth (m)1855
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F085104Metagenome111Y
F091295Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0209977_1000145516F091295AGGAGGMTNRQEYKEALGRLDKDTRVCVKYLEKLVNNKFNEALRTQQPPPKVNLSKIESNLDSLQKQIDGLRPKVDAAYSFVQEHDEQEKYLKSLTKRAEEVLDGVQQHFEELYDSGYYSEGTRRKIRDEGLIRKTTK
Ga0209977_100014555F085104GGAGVPDLGDTDLMEIHAVVTPADILKLLEKHRDRYIKTLDDVKRIYRAQTERYAEAYKEYTQKEIDGDLTEAEKKAKPTEPRMQPDRTKTYDRYIALYKATQAESVYLSEQHFGEFFLDEWEFIRTHISHLRVLRAGGTGTFLDSDLSAVAADALTLYGS
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