NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209977_10260558

Scaffold Ga0209977_10260558


Overview

Basic Information
Taxon OID3300024432 Open in IMG/M
Scaffold IDGa0209977_10260558 Open in IMG/M
Source Dataset NameDeep subsurface microbial communities from Indian Ocean to uncover new lineages of life (NeLLi) - Sumatra_00607 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)839
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location Namenear North Sumatra
CoordinatesLat. (o)1.759Long. (o)96.774Alt. (m)Depth (m)1855
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009424Metagenome / Metatranscriptome318Y
F013647Metagenome / Metatranscriptome269Y

Sequences

Protein IDFamilyRBSSequence
Ga0209977_102605581F013647GGAGGMSGKINEVSAYVFGRVKPTSPKEAYGHSTAAGRGYYTTEEMSDERTEDFMRAQKRSNNMANVEGEMIGSWNLDF
Ga0209977_102605582F009424AGGAGGMASAKHTASGKIPANGLSSLEDVSKETLASLALVSHGPNQMPMGVVHKSISTDRGKFTFD

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