NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255185_1002106

Scaffold Ga0255185_1002106


Overview

Basic Information
Taxon OID3300024490 Open in IMG/M
Scaffold IDGa0255185_1002106 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Cont_RepB_0h
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2899
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Louisiana
CoordinatesLat. (o)29.8571Long. (o)-89.9778Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040592Metagenome / Metatranscriptome161N
F073460Metagenome / Metatranscriptome120N

Sequences

Protein IDFamilyRBSSequence
Ga0255185_10021065F073460GGAGMIRSLNLLANGLICVGGLAFYVMLFTKIGDGVKQIDQFGKVSYHLIRTGLAFIVAGALFNVLLLTVPPASEVLMNLGFGLVLSWAAVWHGKKFGVITGVKAIDRKTGTYRVPK
Ga0255185_10021066F040592GGGGGMAQDKSSVMLLVAGFFGSLVAVGKANHSNLRDNLLAISAGTSSAYFLTPVVFEVTGIAASPNVQSGMAFLLGVLGMRGVEMLIAKIFPETKE
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