NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255181_1000978

Scaffold Ga0255181_1000978


Overview

Basic Information
Taxon OID3300024502 Open in IMG/M
Scaffold IDGa0255181_1000978 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Altamaha River, Georgia, United States - Atl_Colum_RepC_8d
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8822
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (44.44%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium Cent15-Ar3(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.4271Long. (o)-81.6053Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037188Metagenome / Metatranscriptome168N
F058105Metagenome135N

Sequences

Protein IDFamilyRBSSequence
Ga0255181_10009788F058105N/AVNAHPTIISAAKLLKEKWPTCSTWNNDELLNWIGIFNAKRQIGIVMDGDECVGVGAVRFINSIEESKDIYNDDPNGHIAWIEVVVTSKPMAVQTLWLAMKARCSANVTKMGGTNVHTGVSRLYDFERYFKLLMNDRICYGRKLQST
Ga0255181_10009789F037188N/AAASGQVWSFNDYLPNTRLSPVAASAYLDGGATYESSVITKAYNLNEPIPDKIGYSVQLAFDNPYTTQNVPVSVSYAKDMSGTFSTIDPALNITASQKFLKAYNLISKGRWNTIQFKVNTNSGGRLCLQSTILSGFVDSVRPQQ
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