NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255175_1041787

Scaffold Ga0255175_1041787


Overview

Basic Information
Taxon OID3300024509 Open in IMG/M
Scaffold IDGa0255175_1041787 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Altamaha River, Georgia, United States - Atl_Atl_RepC_8d
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)874
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.4271Long. (o)-81.6053Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002406Metagenome562Y
F074873Metagenome / Metatranscriptome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0255175_10417872F002406N/AMEDLKWISAMADRLKETNMNEMDDETKDLIIRAFMNGLFKNPGLVEDLKSSSLIESDYFEDEE
Ga0255175_10417874F074873N/ASCDNWGVKWDASALKSKELPDFNTVIYSFNSPWGTPEHFVIELSKLYPDACFEMVSGSIENDNHYEFVCDNGKMEITCCYETFREAIEDGKWGGMSEWSDLLEESEEIDS

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