NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209980_10072916

Scaffold Ga0209980_10072916


Overview

Basic Information
Taxon OID3300024516 Open in IMG/M
Scaffold IDGa0209980_10072916 Open in IMG/M
Source Dataset NameDeep subsurface microbial communities from Mariana Trench to uncover new lineages of life (NeLLi) - CR02 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1700
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location NamePacific Ocean: Mariana Trench
CoordinatesLat. (o)12.6311Long. (o)144.7214Alt. (m)Depth (m)6844
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048324Metagenome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0209980_100729162F048324GGAGMKKYIFAVLTLTLVAACEPQPTSAEDIDFQKLEGMQTECAKRAASAAMKSFSEDTGWTDLLSVEDAADAVAAITDATQLELQSCITDIYLMGIEDGRVLEREVY

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