NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255046_10002600

Scaffold Ga0255046_10002600


Overview

Basic Information
Taxon OID3300024519 Open in IMG/M
Scaffold IDGa0255046_10002600 Open in IMG/M
Source Dataset NameSeawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_27
Source Dataset CategoryMetagenome
Source Dataset Use PolicyRestricted
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).


Scaffold Components
Scaffold Length (bps)5386
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (14.29%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location
Location NameCanada: British Columbia
CoordinatesLat. (o)49.2166667Long. (o)-123.5333333Alt. (m)Depth (m)200
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000352Metagenome / Metatranscriptome1247Y
F022015Metagenome / Metatranscriptome216Y
F023593Metagenome / Metatranscriptome209N
F036489Metagenome / Metatranscriptome170N

Sequences

Protein IDFamilyRBSSequence
Ga0255046_1000260013F000352N/AMRNIKLTENNCIFVHYVLKYYANHTENLDSDDKDEIYEVAAKFK
Ga0255046_1000260014F023593AGCAGMSKMNEIDEVAQYQADVILETLKEQVEWAIADYDLSGDDYYNLRDYTVYQTVIKLLEQVDLVDVDNYKQNTIISG
Ga0255046_100026007F022015N/AMYYQSKSNMTWEQAFAEVNASVLRHEIICAIASEVAGKPVENLIGFTNEQRELVWNDYYNTTELCE
Ga0255046_100026009F036489AGGMKNNLRNVVFTTMVGLCTFQIGVIWKQNKVDQVNEWRESIVESYILRTDDGTMLGYNINILDDERLFTYED
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