NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255047_10002992

Scaffold Ga0255047_10002992


Overview

Basic Information
Taxon OID3300024520 Open in IMG/M
Scaffold IDGa0255047_10002992 Open in IMG/M
Source Dataset NameSeawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyRestricted
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).


Scaffold Components
Scaffold Length (bps)10823
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (60.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location
Location NameCanada: British Columbia
CoordinatesLat. (o)50.0528611Long. (o)-123.8211389Alt. (m)Depth (m)425
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002150Metagenome589Y
F008596Metagenome331N
F089026Metagenome109Y
F093971Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0255047_1000299212F093971GGTGGLSENKKTKKDESENFIDTLKDLLADPHQDDVWNEKFKATVRKYFDI
Ga0255047_1000299222F089026GAGGMTRPTRSYKDRSITEFNEYSDESIRHFIQVKKQWRTLKND
Ga0255047_100029926F002150N/AMVSVAVPGMIAGKTVKKSGQVLQEQFGYNFIDLVTKLALFYVISFLIAKYMEAVIYFQGGLSTIAGFFGIKLVQADQLPNQWVSLFVDTDQKTYSSTPTAPGQFNPPGWDRPYDYGTPEHQQAEPHLFPQKEQQFKFWDLINAIAIFYISWEAYKYWKNGGTDFLTLGIFGLLIAVLSVLSFSRFLNRFSLNRFQEANK
Ga0255047_100029929F008596GGAGMSGAWDIATATSLGTGVAKTQINGGANLTKPTQAVNLVEVVPYTVSSGAYTAGESIALTAYLDSFSVDLLPKRIIVPPVQAGLGTFINIVAPILEAYECNTGLQEGATSQFIVSGQAQVANTVAPLMAMALHYSTTPPNRPEHFYHKPDNESTFTTATTNAGNDFTINDGMWLEDMYVSVFAGTPTVSQSISGYGEFSSNDFGNSLPLKVPMQPGACGLAGTMTPGNLQLASYHNTHMPMKTSCKISTSFTNDVTQTATTRFVMGVGYTKQG
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