NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0256302_1159005

Scaffold Ga0256302_1159005


Overview

Basic Information
Taxon OID3300024571 Open in IMG/M
Scaffold IDGa0256302_1159005 Open in IMG/M
Source Dataset NameMetatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Colum_RepA_8h (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)531
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)46.1812Long. (o)-123.1834Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007408Metagenome / Metatranscriptome351Y

Sequences

Protein IDFamilyRBSSequence
Ga0256302_11590051F007408N/ANANVDSVFSGQPETVTAPLDELLGHIFEVQVRGFNSIRVLYITKLKESLGETKDHDGVKAASRTALREAIFETINILAEEHWVKTHEALTAAAKAYVVYQFTVEVWPSIKEGLDALLELLPDELKSLGLDIAGMVLKVALIIINKGVDWAMAKIGLKLEGAIFSQEDSSE
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