NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255293_1025777

Scaffold Ga0255293_1025777


Overview

Basic Information
Taxon OID3300024851 Open in IMG/M
Scaffold IDGa0255293_1025777 Open in IMG/M
Source Dataset NameMetatranscriptome of freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Miss_RepC_8h (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1079
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Louisiana
CoordinatesLat. (o)29.8571Long. (o)-89.9778Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F079656Metagenome / Metatranscriptome115N

Sequences

Protein IDFamilyRBSSequence
Ga0255293_10257772F079656GGAMGDISGDDINAAQYMSAGTPVFGTTWPSATDWNKVTRKDYVDYHRMAQTDVPTAFSYDASLTGIDTTGNVNNAVYYLNGNVVLYADSATTAANDSANYVMTVVGQNFKNLLTSIGGTTDVSAQLWLENNKLDLTFASHKYTVVNDSTITFTVGYRDIDPLTDCTSGVVRPTLALGTATGGFHMTGLHFFFDIVE
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