Scaffold Ga0256312_1018468

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0256312_1018468

Scaffold Ga0256312_1018468

Overview

Basic Information
Taxon OID	3300024861 Open in IMG/M
Scaffold ID	Ga0256312_1018468 Open in IMG/M
Source Dataset Name	Metatranscriptome of freshwater microbial communities from St. Lawrence River, New York, United States - Law_Cont_RepA_8h (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1411
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location Name	USA: New York
Coordinates	Lat. (^o)	45.0061	Long. (^o)	-74.7949	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F021092	Metagenome / Metatranscriptome	220	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0256312_10184683	F021092	AGTAG	MTDPHYILEYMQDNDLRYFQVANQFNRDVVVSFNDRSLEDGVEKMRKFLSKNTGFHRIKLYSNNDLKTNGVPRQEPQVFEVSITGKEFDPPKEDSAPITGFGVNPGYPSAGGIIGVEQYLNKHEENATLREKIKGLELELQYMRDQHNRELERLRSDNDAALKAAKDSNQMFSQGL

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