NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255272_1007758

Scaffold Ga0255272_1007758


Overview

Basic Information
Taxon OID3300024866 Open in IMG/M
Scaffold IDGa0255272_1007758 Open in IMG/M
Source Dataset NameMetatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Atlam_RepB_8h (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2520
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (90.91%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.4271Long. (o)-81.6053Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001019Metagenome / Metatranscriptome804Y
F001460Metagenome / Metatranscriptome690Y
F023344Metagenome / Metatranscriptome210Y

Sequences

Protein IDFamilyRBSSequence
Ga0255272_10077581F023344N/AMFLCAIQVDIEQNLFEQWNNSNLDVGEEYAEFKFIEFAPDNVKQSYNEFYGYKEGDEYFQ
Ga0255272_10077582F001460GAGMLGYTEEDLNRMINAVHDAKLFYLRSPSDLIDNAPLKKDLEDAVSFMQGLWAEGYFD
Ga0255272_10077588F001019GGGGGMSNYAPSLEILEIAYEVSPGGERTFEVYDKDESDPVHLPIYETESLTDACEFCYNLGKDFIVRTYAEWEMRELLADI
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