NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209914_1010400

Scaffold Ga0209914_1010400


Overview

Basic Information
Taxon OID3300024984 Open in IMG/M
Scaffold IDGa0209914_1010400 Open in IMG/M
Source Dataset NameWastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_cont_500_plan (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4353
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioremediation → Hydrocarbon → Unclassified → Unclassified → Wastewater Bioreactor → Wastewater Bioreactor Microbial Communities From Cape Town, South Africa

Source Dataset Sampling Location
Location NameSouth Africa: Cape Town
CoordinatesLat. (o)-33.927Long. (o)18.452665Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001866Metagenome624Y
F007322Metagenome353Y
F017165Metagenome242Y

Sequences

Protein IDFamilyRBSSequence
Ga0209914_10104002F001866N/AMVVEAGDDDSALIGDAYSMRITELAWLIALGAELEQERAIDRRQYLHSMIVGISDDDSMSIMIDRNAHWRIELARLRSSLGADGEQEREIDRRQEHQSTVVGISDDDAMMMLVDRNAMRTVELEIS
Ga0209914_10104003F017165AGGVHVIGANQWLADTFTWRVYRHRYAPSSMRQAVSTMTMIRSLVDECSAMSMIPNELLFEIFSHL
Ga0209914_10104007F007322GAGGMIVIDRKAPWIRELAWFVAILAELGHERAIITREYLHSIIVGVGDEQETSMMVERQAIREVELAFSLAILLGADRELDSSSITIKSIVSHLFLFNLSLTTTKR
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