NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209915_1009695

Scaffold Ga0209915_1009695


Overview

Basic Information
Taxon OID3300024990 Open in IMG/M
Scaffold IDGa0209915_1009695 Open in IMG/M
Source Dataset NameWastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_cont_750_plan (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4878
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioremediation → Hydrocarbon → Unclassified → Unclassified → Wastewater Bioreactor → Wastewater Bioreactor Microbial Communities From Cape Town, South Africa

Source Dataset Sampling Location
Location NameSouth Africa: Cape Town
CoordinatesLat. (o)-33.927Long. (o)18.452665Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001866Metagenome624Y
F026045Metagenome199Y

Sequences

Protein IDFamilyRBSSequence
Ga0209915_10096955F026045N/AMTIWMPNELGVGKPLIGSNHMHSMSCREGDETSMLVERNGPWPRGATIEGRDVMAFVSERLKPIVIAIGDDDSTLIGDAYSFGIVEVAWLIAFGAELEQERAIDQRQYLHSMIAGITDDDSMSIIIDRNAHWIIELARLRSSVADREQEREIDRRQEHQSAVELIDDDAAMMMLVDRNALRIAELEIS
Ga0209915_10096958F001866AGGAMALVSERLQSIVAGIGDNNSTLIGDAYSFGIVEVAWLIAKRAELEQERAIDQRQYLHSMIAVISDDDSMSIIIDRNACWIMELARLRFMLANREQEREIDRRQEHQSMVEGIGDDDATMMLVDRNALRIVELEIS
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.