Basic Information | |
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Taxon OID | 3300024990 Open in IMG/M |
Scaffold ID | Ga0209915_1020274 Open in IMG/M |
Source Dataset Name | Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_cont_750_plan (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2652 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Engineered → Bioremediation → Hydrocarbon → Unclassified → Unclassified → Wastewater Bioreactor → Wastewater Bioreactor Microbial Communities From Cape Town, South Africa |
Source Dataset Sampling Location | ||||||||
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Location Name | South Africa: Cape Town | |||||||
Coordinates | Lat. (o) | -33.927 | Long. (o) | 18.452665 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001866 | Metagenome | 624 | Y |
F007322 | Metagenome | 353 | Y |
F062911 | Metagenome | 130 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209915_10202742 | F062911 | GAGG | MIVIDRKAVWMVQLAWLAAFLAELGHERAIITREYLHSMIVVIDDKQETSMMVECKVHRVVELAISKALLLGADRELDSSITIKSIVFHLFHFSLSLSLSHNDKEMIQAPNCSNQRAEDMKLSHTHETREERHQASKQRATRSNKNQSMKDQRTAPPSLNQPLPHSHEPLLDLHHHS |
Ga0209915_10202744 | F001866 | N/A | MVVIVGDDDSALIVNAYSSRMAELAWLLAKRAELEQERAIDRRQYLHSIIESISDDDSMSIMIDRNAHWTVELAWLRSRTADLEQVREIDRRQEYQSIVGGIGNDDAMMMLVDRNASRKVGLGIWWCIIVDARQERLLAQ |
Ga0209915_10202745 | F007322 | GAGG | MIVIDRNAISRVELAWLAELGHERAAIIIIAREYLHSMISSIDDEQEISMMVERQAIRIVELAISIAFLLGADRELDSSITIKRIVSHLFHFNLSLTTTKRCSKLQTAQTKEMKI |
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