NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209915_1046285

Scaffold Ga0209915_1046285


Overview

Basic Information
Taxon OID3300024990 Open in IMG/M
Scaffold IDGa0209915_1046285 Open in IMG/M
Source Dataset NameWastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_cont_750_plan (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1429
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta → Adineta ricciae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioremediation → Hydrocarbon → Unclassified → Unclassified → Wastewater Bioreactor → Wastewater Bioreactor Microbial Communities From Cape Town, South Africa

Source Dataset Sampling Location
Location NameSouth Africa: Cape Town
CoordinatesLat. (o)-33.927Long. (o)18.452665Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F092364Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0209915_10462852F092364N/AKHSSCIVGDQCSLFTKGIGLTINDILRNKIQSNISFRKQSTFIQTAAAITMIMFVIGFINGIFSLITFRNKELRKVGCGIYLLASSITSLLTITMFTMKFWFVVLIQLHSTIRSSILRTDCAFIGPVLKLCLYLDGWLNACVAIERTVTVSKVVNFDKKKSRHAARWIILILPIFIMGTLIHEPIHHELFEYTTYEYNPINISNNLIMNMSVENEHNVLCVIRYSRSVQIYNTITLFIHLIVPFLANLFSALFIIFGTARRLSTAQTNKKSFKQHVINQIREHKQLLISPFILLVLALPRLIMSLVSGCIDPSENPWLYLNGYFISFTPPMLVFTVFVLPSELYRKTFKDSITRWRQHI
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