Scaffold Ga0209930_1022018

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209930_1022018

Scaffold Ga0209930_1022018

Overview

Basic Information
Taxon OID	3300024992 Open in IMG/M
Scaffold ID	Ga0209930_1022018 Open in IMG/M
Source Dataset Name	Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_cont_500_biof (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2895
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Porifera → Demospongiae → Heteroscleromorpha → Haplosclerida → Niphatidae → Amphimedon → Amphimedon queenslandica	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioremediation → Hydrocarbon → Unclassified → Unclassified → Wastewater Bioreactor → Wastewater Bioreactor Microbial Communities From Cape Town, South Africa

Source Dataset Sampling Location
Location Name	South Africa: Cape Town
Coordinates	Lat. (^o)	-33.927	Long. (^o)	18.452665	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001866	Metagenome	624	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209930_10220181	F001866	N/A	MWALTTTIERRDVMAFVSERLQSIAGVGDDDSTLIIDAYSSRIVELAWLMAFGAELEQERAIDRRQYLHSMIAGVTDDDSMSIVIDRNARWILELARSRSFLADREQEREIDRRQEHQSMVGIGDDDAMMMLVDRNANRLVELEIS

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