NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210018_1033187

Scaffold Ga0210018_1033187


Overview

Basic Information
Taxon OID3300024995 Open in IMG/M
Scaffold IDGa0210018_1033187 Open in IMG/M
Source Dataset NameGroundwater microbial communities from aquifer - Crystal Geyser CG09_land_8/20/14_0.10 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1588
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Sampling Location
Location NameUSA: Utah: Grand County
CoordinatesLat. (o)38.9383Long. (o)-110.1342Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007959Metagenome / Metatranscriptome341Y
F104465Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0210018_10331871F104465N/AMKKIDENKKMRKEYNARGERTYENSINRENAKKIRKIK
Ga0210018_10331874F007959N/AMEKFKKFKQENKDFLLPCNLSTKEKDIFMYLFRFLRKKIDQGIYPEIYNDEIIYTKPDVKSLLLKEIVLCKKYKKGWVITVNPHNITKNTECGFCGAKFNEIVYFRQNSITCPGCGFRMHSPTTAKRVDDYSKAITNTEKLTTDIVKVPNEHVITGTPGNIKVTDIVLAPTAMERTIQIANQEVI
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