Basic Information | |
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Taxon OID | 3300025006 Open in IMG/M |
Scaffold ID | Ga0209935_1007732 Open in IMG/M |
Source Dataset Name | Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_cont_1000_plan (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 8134 |
Total Scaffold Genes | 13 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (46.15%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Malacostraca → Eumalacostraca → Eucarida → Decapoda | (Source: UniRef50) |
Source Dataset Ecosystem |
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Engineered → Bioremediation → Hydrocarbon → Unclassified → Unclassified → Wastewater Bioreactor → Wastewater Bioreactor Microbial Communities From Cape Town, South Africa |
Source Dataset Sampling Location | ||||||||
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Location Name | South Africa: Cape Town | |||||||
Coordinates | Lat. (o) | -33.927 | Long. (o) | 18.452665 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001866 | Metagenome | 624 | Y |
F007322 | Metagenome | 353 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209935_10077323 | F001866 | GAG | LQSIDEVGDDDSTLIGDAQSLRICEVAWLIAFEADLEQERAIDQRQYLHSMIEGISDDDSMSIMIDRNAYWIMELARLGSSLADREQEREIDRRQEHQSIVVGIDDDDPMMMLVDSNASRILELEIS |
Ga0209935_10077324 | F007322 | GAGG | MIVIDRKAKWILELAWLVASLAELGHERAAIVIIATREYLHSIIVEIGDEQEASMMVERQASRFVEQAIGIAMSLGADRELDSSITIKSIVSHLFRFNLSLSRSQRQRDDSSSKLLKPKR |
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