NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210023_1098037

Scaffold Ga0210023_1098037


Overview

Basic Information
Taxon OID3300025014 Open in IMG/M
Scaffold IDGa0210023_1098037 Open in IMG/M
Source Dataset NameGroundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-24 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)784
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Aquifer → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Sampling Location
Location NameUSA: Utah
CoordinatesLat. (o)38.9383Long. (o)-110.1342Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044906Metagenome / Metatranscriptome153N
F060596Metagenome / Metatranscriptome132N
F086603Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0210023_10980371F060596N/AMENKEASVGAIPIPDENVAKKKMAKNRTMVLLDRKIVDRLCCCKKRIGNTYNSVISNLLDKYENEE
Ga0210023_10980372F044906N/AMKSDNKKEHTTIQAKTNVANRLKKMLRVGVTYDDIITDLIGYYRATK
Ga0210023_10980374F086603N/AMMKRPIDFEKFKREYKKDFNIPVLSTKEKDIFMYIFFLLRKKISKGIFPELYNSEILFSKSDLKALILKNIVIFQNHKK
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