NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210043_1050052

Scaffold Ga0210043_1050052


Overview

Basic Information
Taxon OID3300025018 Open in IMG/M
Scaffold IDGa0210043_1050052 Open in IMG/M
Source Dataset NameGroundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-01t (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1378
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → environmental samples → uncultured archaeal virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Aquifer → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Sampling Location
Location NameUSA: Utah
CoordinatesLat. (o)38.9383Long. (o)-110.1342Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014357Metagenome / Metatranscriptome263Y
F019951Metagenome / Metatranscriptome226N
F026802Metagenome / Metatranscriptome196N

Sequences

Protein IDFamilyRBSSequence
Ga0210043_10500521F014357N/AKDSKELTFLMYGQPATDVNTSTDTQITKKNNPSEFCDFPFRGGVAAKRKIDLYGILYSSRGADDGDLTHYIHTEYLKLMKGRNVLFDSMRKGLPAHGKNVPVNGAFRAENGYDVGGEYSDIYQKDALIFDQPIRFMNGEELDTYWTTLVLTSAPGTFLARELEIAYILKETQE
Ga0210043_10500522F019951N/AMTILFKEFRIDVSANNVKCEANNKLYVQKGQKIKLHAIQIAPGIDIAHEDVFIMLYRDQEQLAGEGIYHAIIDDYTHTIEFDADAVEGQTFVTKAWGSYARTINGVYMYEITS
Ga0210043_10500523F026802N/AMYYYVPFSRNLTRGNTEEIAAADPGHLVGVFLRFKSGVEGFHPLWGQISISDIGTTKEYLLKNGIYAIFQRNTDGYVQNHWYQPAFIPLDHDIRADHQVLLETFTWATNFILVRGHFIYS
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