NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210017_1148866

Scaffold Ga0210017_1148866


Overview

Basic Information
Taxon OID3300025021 Open in IMG/M
Scaffold IDGa0210017_1148866 Open in IMG/M
Source Dataset NameGroundwater microbial communities from aquifer - Crystal Geyser CG08_land_8/20/14_0.20 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)812
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Altiarchaeota → Candidatus Altiarchaeales → Candidatus Altiarchaeum → unclassified Candidatus Altiarchaeum → Candidatus Altiarchaeum sp. CG2_30_32_3053(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Sampling Location
Location NameUSA: Utah: Grand County
CoordinatesLat. (o)38.9383Long. (o)-110.1342Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000320Metagenome / Metatranscriptome1306Y
F000449Metagenome / Metatranscriptome1126Y

Sequences

Protein IDFamilyRBSSequence
Ga0210017_11488661F000320N/AMQATMKNTKMPQSKDYKSEALGREILRKINQIGEKTYKLKKDVNDVCGLILSKPGGTFFFESHKAELWEEASDDFSQRWKEIAAEKYEVECMVNLMYELILR
Ga0210017_11488662F000449N/AMKNKKAGEEDIPSPDLDQEYELRTSAPQEEMERYYARKKASLERKLRKINKKIKKNIYNPYAGDDEKYKNAPE

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