NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210049_1048895

Scaffold Ga0210049_1048895


Overview

Basic Information
Taxon OID3300025036 Open in IMG/M
Scaffold IDGa0210049_1048895 Open in IMG/M
Source Dataset NameGroundwater microbial communities from aquifer - Crystal Geyser CG06_land_8/20/14_3.00 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2490
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → environmental samples → uncultured archaeal virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Sampling Location
Location NameUSA: Utah: Grand County
CoordinatesLat. (o)38.9383Long. (o)-110.1342Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026802Metagenome / Metatranscriptome196N
F044301Metagenome154N

Sequences

Protein IDFamilyRBSSequence
Ga0210049_10488951F044301N/AMAVTKEMAVGKYKDKISSDSFNKGVSAVTKSPAQQAVAQKDAFAKNTIAGKEAMIKNLSKVSVEEWKAKTIAGFDKLQAKVVRAVETGKWNAAKTLTAGKNAHAAVANMKKGTLSDSYERYLAAQKAVVAVYA
Ga0210049_10488954F026802N/AMYYYVPFSRDLTQGNTEEIAVADPGHLVGVFLRFKSGVEGFHPLWGQISISNIGTTKEYLLKNGIYAVFQRDTDGFVLNHWYQPAFIPLDHDIRANHKVLLETYTWGANFISVRGHFVYS
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