NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210049_1115150

Scaffold Ga0210049_1115150


Overview

Basic Information
Taxon OID3300025036 Open in IMG/M
Scaffold IDGa0210049_1115150 Open in IMG/M
Source Dataset NameGroundwater microbial communities from aquifer - Crystal Geyser CG06_land_8/20/14_3.00 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1309
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Sampling Location
Location NameUSA: Utah: Grand County
CoordinatesLat. (o)38.9383Long. (o)-110.1342Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002857Metagenome / Metatranscriptome525Y
F017787Metagenome238Y
F049412Metagenome / Metatranscriptome146Y

Sequences

Protein IDFamilyRBSSequence
Ga0210049_11151501F017787N/AEEMLDRVRTFIFFKDMKKKIKEMEEHKEEYNNTEKIIREGVHSETKEKYALGVRARFEVKFQYFEISKHPKFDDECVYLSRKFFFLKNNITDDERKEIEKFENDILNKFYYGK
Ga0210049_11151502F049412N/AMKISGEVSSVFPDLNCFEIDGNIFFHGVKASTVNKLRLGQKITVRYKIKKIKSGDWTFRDFIFLKFKQKTNKQRNNGKGKKECRKCTGKGSGERNI
Ga0210049_11151503F002857N/AMEKKKENISVFKDDETTEMKASMKFLRDKNFIERISLRDGLRRKFTMVKDERAEIIGFDGNTKQGITYTITENGNLGSFFTTSMKCISMLSKLSKGDVFEIELRTKKVGDTLISYHIVKK
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