NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210049_1125482

Scaffold Ga0210049_1125482


Overview

Basic Information
Taxon OID3300025036 Open in IMG/M
Scaffold IDGa0210049_1125482 Open in IMG/M
Source Dataset NameGroundwater microbial communities from aquifer - Crystal Geyser CG06_land_8/20/14_3.00 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1221
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Sampling Location
Location NameUSA: Utah: Grand County
CoordinatesLat. (o)38.9383Long. (o)-110.1342Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008119Metagenome / Metatranscriptome338Y
F076875Metagenome / Metatranscriptome117N

Sequences

Protein IDFamilyRBSSequence
Ga0210049_11254821F008119N/AASENVYNMIFVCTEKTNKSITHVVRSVITIGVKRNSTDGTVYFDKINMNIGYINNAGTFTSVSDLDALHAFSTASETYVDLCLQEFVRIMNDYSLVNKRFAVKVNVFAHVNATTTSGQLGVYHTRGSADSYVEVELK
Ga0210049_11254823F076875GAGGMWGSIEKVRNICGITKEQINDIVIHDMLEQTDRKVRD

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