NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210049_1144869

Scaffold Ga0210049_1144869


Overview

Basic Information
Taxon OID3300025036 Open in IMG/M
Scaffold IDGa0210049_1144869 Open in IMG/M
Source Dataset NameGroundwater microbial communities from aquifer - Crystal Geyser CG06_land_8/20/14_3.00 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1089
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → environmental samples → uncultured archaeal virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Sampling Location
Location NameUSA: Utah: Grand County
CoordinatesLat. (o)38.9383Long. (o)-110.1342Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014357Metagenome / Metatranscriptome263Y
F019951Metagenome / Metatranscriptome226N

Sequences

Protein IDFamilyRBSSequence
Ga0210049_11448691F014357N/AVYDIYDAGDIHNTMENGKDSKELTFLMYGQPAANVNTATDTPITRKNNPSEFCDFPFRGGVATKRKIDLYGVVYSSRSADDGYTLSNYIHTKYLKLMKGRNVLFDSMRMGLVAQGKNVSIDGAFEAENGYDIGGEYSDLYQKDALIFDQPIRFANGEELDTYWTTEVATTTGTSPGTLQVSELEIAYILKETQE
Ga0210049_11448692F019951N/AMTILFKAFRIDVLGSNVHCEAYSKLHVQKGQTIILHAIQIAPQISTANEDVFIMLYRDQEQLAGEGIYHAIIDDYTHTIEFDAGAVEGQTFVMKAWGPNARTIHGVYMYEITS
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