NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210049_1183340

Scaffold Ga0210049_1183340


Overview

Basic Information
Taxon OID3300025036 Open in IMG/M
Scaffold IDGa0210049_1183340 Open in IMG/M
Source Dataset NameGroundwater microbial communities from aquifer - Crystal Geyser CG06_land_8/20/14_3.00 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)903
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Sampling Location
Location NameUSA: Utah: Grand County
CoordinatesLat. (o)38.9383Long. (o)-110.1342Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037574Metagenome / Metatranscriptome167N
F044906Metagenome / Metatranscriptome153N
F060596Metagenome / Metatranscriptome132N
F086603Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0210049_11833401F060596N/AMENKEASVGAIPIPDENVAKKKMAKNRTMVLLDRKVVDRLCCCKKKIGNTYNSVISNLLDEYENEL
Ga0210049_11833402F044906N/AMNMKMNCDNKKEHMTIEIKRNIANRLKKMSSVGVTYDDIITDLIGYYRATR
Ga0210049_11833403F037574N/AMTGIFADEVSEWTTITISKDTAKKLKEFFFGKETYNYVITFLLDYHDEKTYRF
Ga0210049_11833404F086603N/AMMKRHTDFEKFKQEYKKDFDIPVLSAKEKDIYIYLFLSLRRKMSKGIFPELYNSEIMFSKSDLKTLVLKGIVIFQNYKRGWII
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Institute for Fundamental Biomedical Research
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