Scaffold Ga0208670_119609

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208670_119609

Scaffold Ga0208670_119609

Overview

Basic Information
Taxon OID	3300025038 Open in IMG/M
Scaffold ID	Ga0208670_119609 Open in IMG/M
Source Dataset Name	Marine viral communities from Cariaco Basin, Caribbean Sea - 24B_WHOI_OMZ_CsCl (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	670
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Caribbean Sea: Cariaco Basin
Coordinates	Lat. (^o)	10.847	Long. (^o)	-65.114	Alt. (m)		Depth (m)	237
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002697	Metagenome / Metatranscriptome	536	Y
F030780	Metagenome	184	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208670_1196092	F002697	AGG	MTKQIKYFSWFMKSRNKFATCRGVDEHENFKSRQWIDLKGNSCYNFWDIDSEHPRTAVNYSVR
Ga0208670_1196094	F030780	AGGAG	MTDKIKQVIWVFDIELNRKKRIQLQTLLDKANHSFRNESIKYFALEKD

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