NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207907_122894

Scaffold Ga0207907_122894


Overview

Basic Information
Taxon OID3300025043 Open in IMG/M
Scaffold IDGa0207907_122894 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - LP-52 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)569
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)50.0003Long. (o)-144.9996Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003135Metagenome / Metatranscriptome505Y
F093716Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0207907_1228942F093716N/AMGKNDLLKRVEKLEEDSHPPVSWKNKIENIIKRVDELTKLYGEIITNLMKQRK
Ga0207907_1228943F003135N/AIVGIIETIGIPVSVALGLGYALMYLIKFLTRDVQEDIKDLHDITVKLIDSNREAKDEVKKTMTGVNVIKDIIIKLFSNGKK

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