Scaffold Ga0207902_1013871

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0207902_1013871

Scaffold Ga0207902_1013871

Overview

Basic Information
Taxon OID	3300025046 Open in IMG/M
Scaffold ID	Ga0207902_1013871 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-45 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	901
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium TMED10	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	50.0454	Long. (^o)	-144.8791	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012032	Metagenome / Metatranscriptome	284	Y
F012880	Metagenome	276	Y
F016013	Metagenome	250	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207902_10138711	F016013	GGAG	MPKDIIPIKSVNAVDISPLLREVIEYTKDQNAVGDLEVLISKVPNKDSLDWKLISGVLCNAIIEWIAKDTNNRKDLLVHLQSEVGYLLQRMGLTM
Ga0207902_10138712	F012880	GAG	MKFNIATLIWSMALMLLTFQFCLLWIDWGFTNTILYKSMLLLDGFMFGIVISDWSHNA
Ga0207902_10138713	F012032	AGGA	MTKQELKTTVGIGFFSCKWIKNNGQVAKVKRGILGQYAWRFTHDPIANRDNFQEHDGYVLAFRVGAGLLPEHARWVNINPNTVFELNRVAV

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.