NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207897_117954

Scaffold Ga0207897_117954


Overview

Basic Information
Taxon OID3300025047 Open in IMG/M
Scaffold IDGa0207897_117954 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-42 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)794
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.9996Long. (o)-144.9998Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F080146Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0207897_1179542F080146AGGAMGVVGAAIKGFGKALKVGKKAKPVIVGRLRKGVDIKQFKKSKKHGLAKKLDVWANRESGKIFSQVGSGVNIKYTKKGKPFVPKRTKSSILTRAKGAAKLVSPIAAAATATAIHDKVKGKK

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