NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207905_1042742

Scaffold Ga0207905_1042742


Overview

Basic Information
Taxon OID3300025048 Open in IMG/M
Scaffold IDGa0207905_1042742 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - LP-49 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)711
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium TMED131(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)50.0003Long. (o)-144.9998Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043090Metagenome157Y
F071651Metagenome122N

Sequences

Protein IDFamilyRBSSequence
Ga0207905_10427421F043090GAGGMKYVIGIGIGIVLTLFYPDIVPYIKNAFIESGVRDATVKTLMNVK
Ga0207905_10427422F071651N/AVLASESNCNYKTNVNTDFQGTISSSKNYNKTSYPHVEDTRKCIIKLDVRINKAWYPTSGTYIFGPDMTETAACKRAEVRAKETILREVVPEKLNRTMNQNCAVYVKTVPVNKAPAPKVIIKKVAIYSGGGWRESGWKNVYTPLTKGCVRSNAPTTVISIHGSKQYAYKEVCRVK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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