NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207898_1000256

Scaffold Ga0207898_1000256


Overview

Basic Information
Taxon OID3300025049 Open in IMG/M
Scaffold IDGa0207898_1000256 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-55 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4524
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (85.71%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.567Long. (o)-138.6676Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047715Metagenome149N
F064782Metagenome / Metatranscriptome128N
F067816Metagenome / Metatranscriptome125N
F095325Metagenome105N
F099127Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0207898_100025610F067816GAGGMTTDVYLDDKTGSIPAVEVDIILVLANYEGANLEAPSARREIAREVHRMLLAKNYVVQHKQCSGA
Ga0207898_10002563F099127AGGALTDSPAYYDLTGDSGGGKLPAGNYEAIIVDMSTVTDIKCGLFIADVFKPVYRVIAGDHKNMEVTDNGVFRYKQVDGYEYESNKNWGFAKFMQLLGKYSKDEGRINLPYITKNDVSQKRVRIMVWDKSFINETSDRISYPVARAVSLISEVPF
Ga0207898_10002566F095325AGGAMNEEKQPDWDNINRGKVRHFFALELYKKGGKLTNSEMGTIEMYVEYVMSGEDFKDVIREESATRLMGEKECNNIITANGRDAESVSAEEHTKAIIHLEANGLKDNDLKSVLKALDAGQIHQGNLTASINKINNIKSEYDKE
Ga0207898_10002568F064782GAGMDLKAEVVLKNIRKDIKRIRDRNRKMNNHPYAENTMVMIGLMRAVEIVEELRNEEMEKLIDWGEEQKRLVSN
Ga0207898_10002569F047715GGAGMYIDYCPTCTPNKDEPVYLKSYGEAYKDIMSSTVKMEWFMKCPRCEQLFDGGDLYIEKEHGLKSRSSIKEY
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