NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207898_1003788

Scaffold Ga0207898_1003788


Overview

Basic Information
Taxon OID3300025049 Open in IMG/M
Scaffold IDGa0207898_1003788 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-55 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1734
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.567Long. (o)-138.6676Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006469Metagenome / Metatranscriptome372Y
F054938Metagenome / Metatranscriptome139Y

Sequences

Protein IDFamilyRBSSequence
Ga0207898_10037882F006469AGGAGMANIGQPPSTGTATAIGPDMNPPPYSEGEPKLKKYGPGVDGALGTTEHNGSIDNVIRTQVSKVGKVYGW
Ga0207898_10037883F054938GGAMAGKVKKSVKSKTVNKSKSKPQTLEEKLSDAKVRMNRIAEGDDPGYHLQ

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