NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207892_1004071

Scaffold Ga0207892_1004071


Overview

Basic Information
Taxon OID3300025050 Open in IMG/M
Scaffold IDGa0207892_1004071 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-54 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1464
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.5673Long. (o)-138.6705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000319Metagenome / Metatranscriptome1307Y
F055776Metagenome / Metatranscriptome138Y
F099865Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0207892_10040711F099865N/ASSRYDSDDKITLSDCEDQIRTWAKTLAEREIEKRPEGKQLARLKEIKRSALDTIMESEAPTALIEILNKHMTKFIGISWHEQPRAIEHN
Ga0207892_10040713F055776GAGGMNADKKPSEFSTHLFEMTKSFSNMSRTGQLYGRLNMIKDMQIYLAKEETKVKKEIEENEIIK
Ga0207892_10040714F000319N/AMRSSNNELLIIILGAAVCGAYYAWQDYKRKKEEKRQERLNKIKIDND
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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