NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207892_1036831

Scaffold Ga0207892_1036831


Overview

Basic Information
Taxon OID3300025050 Open in IMG/M
Scaffold IDGa0207892_1036831 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-54 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)568
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.5673Long. (o)-138.6705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003936Metagenome / Metatranscriptome461Y
F012881Metagenome / Metatranscriptome276Y

Sequences

Protein IDFamilyRBSSequence
Ga0207892_10368312F003936AGAAGLARGILFCANDFVMIETLEIFWSTKIELRVIILAVLIGSCFWYWQDYKRKQKEKQQARLNQIK
Ga0207892_10368313F012881GAGGMFGKNKNAFLTTNLIVKVRKYKSEQPYFSFHSMPAIANEEKATLTVEKLNELAKIEPEENWQEEYYSVPMTL

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