NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207906_1000796

Scaffold Ga0207906_1000796


Overview

Basic Information
Taxon OID3300025052 Open in IMG/M
Scaffold IDGa0207906_1000796 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-37 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8867
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (42.86%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)50.0Long. (o)-145.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002232Metagenome / Metatranscriptome580Y
F004818Metagenome422Y

Sequences

Protein IDFamilyRBSSequence
Ga0207906_100079617F002232N/AMSVKAVKKLRKLKDQLDKLEEKEDDLLNEMDEAIDELEDPNED
Ga0207906_100079620F004818AGGAGGMKNNIVKRFISWRIRGLFVAEKRLKSLLQADTKKGASDKELDGLYKIISSELRAISNMQNEIITLQLIDEENQK

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