NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207906_1001485

Scaffold Ga0207906_1001485


Overview

Basic Information
Taxon OID3300025052 Open in IMG/M
Scaffold IDGa0207906_1001485 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-37 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4752
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)50.0Long. (o)-145.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007837Metagenome / Metatranscriptome344Y
F013596Metagenome / Metatranscriptome270Y
F094574Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0207906_10014855F007837N/ALVSGLSVLPKISARNLDLKLNTVIDLKTTINPLIVNYAAQYQSLSNSIMIDNQDAANAVTVRLNRSTNTITIAGGNFRTFNDAWIEQIDCTGASTNVQVTSQISPLRQISPYGQGVTN
Ga0207906_10014858F013596N/AMEAFIPFLTILVIVLPVCLTGLFVAKIWRTNAILDPKITKKLDSHRQQYTEQLEKEKRSLQNKLNSMQKGPELNEIGDLDGVLPDLIGQLDGILPKWAAKFIKGQPDLINTVIEYAKSNPEKAKELIGRFVKIKPATKSVSDDSLQGL
Ga0207906_10014859F094574N/AMSIMDTKLRSFNISNNKMYERFKQIQLERGKNASLRLNELIAKEVKEADPQFKELNAVRSKDAADIIIPNPFLMDQFHSLPIWEEYLRTLTKQENEDLHSHLIALKTITQDFEDHKDKDDLDRLD
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