NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0207906_1060038

Scaffold Ga0207906_1060038


Overview

Basic Information
Taxon OID3300025052 Open in IMG/M
Scaffold IDGa0207906_1060038 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-37 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)501
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)50.0Long. (o)-145.0Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004165Metagenome450Y
F025154Metagenome203Y
F081434Metagenome114N

Sequences

Protein IDFamilyRBSSequence
Ga0207906_10600381F004165N/ARREVDLDLGVKAPKSIIFTSKKVYKRKKKHKLNTNEDG
Ga0207906_10600382F081434N/AMKTIKFVEVKRSAFLKDKKVLLNGKNILTRIIDLKGGNWNECVRDTDSDGKTTISPVYPTYYKINGYYYV
Ga0207906_10600383F025154N/AMNPWEIVKLIAGHIYTDEQIDEMTWAECEEIINQKE

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.