NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208018_100079

Scaffold Ga0208018_100079


Overview

Basic Information
Taxon OID3300025057 Open in IMG/M
Scaffold IDGa0208018_100079 Open in IMG/M
Source Dataset NameMarine viral communities from the Gulf of Mexico - 31_GoM_OMZ_CsCl metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)39637
Total Scaffold Genes60 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)34 (56.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameGulf of Mexico
CoordinatesLat. (o)28.867Long. (o)-90.467Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001190Metagenome / Metatranscriptome753Y
F001806Metagenome / Metatranscriptome631Y
F002721Metagenome / Metatranscriptome534Y
F018836Metagenome / Metatranscriptome233Y
F031452Metagenome / Metatranscriptome182Y

Sequences

Protein IDFamilyRBSSequence
Ga0208018_10007913F031452AGGCGGMAEFGEIVDGTFFLSPEQVEVRKYGYSPIKASGIPTVYHAGDVVNLPYASGEISTMEALGLAWGSFSSGVVPE
Ga0208018_10007935F018836GAGMTATPTSITDTYNTDDWFDLDKYRQAAGVAYEFSKKKLEDTGAQERETIGKGATEQRTSAEQAQRFKQEDEARDYGQAQRAYRY
Ga0208018_10007936F001190N/AMTVAGNTNDDYFDISKFEQLLERLESSKQRQQRQKSVEGRRDIFATGLAGMMSNF
Ga0208018_10007943F002721N/AMAKDHRLDLGRYITNPFNEQGRIRKNLDFDELFRAKPESGSFPWNPSRFTERDLTNRVMTRKRKLNPTLNFVQNSPFFDDNSEVNSDYELFEGLGRFNRPMDYDFNEGRALTQQRPENQPDFNPIWVEAYKLSPTIKPGKSAKNPMPRMRNPDPNGYLLAMAEKRAENETEGKMSIAQLLDNKGVMKSLPPKETEDEQGQTTADESTEEAK
Ga0208018_10007946F001806N/AMDAGTRQKRVEALESIKNKAMEMAAKGADSGTVREFVKDAKVNLAYELPDEEAFTKAARATLAYKRKKG
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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