Scaffold Ga0208018

Basic Information
Taxon OID	3300025057 Open in IMG/M
Scaffold ID	Ga0208018_100134 Open in IMG/M
Source Dataset Name	Marine viral communities from the Gulf of Mexico - 31_GoM_OMZ_CsCl metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025057 Open in IMG/M

Scaffold ID

Ga0208018_100134 Open in IMG/M

Source Dataset Name

Marine viral communities from the Gulf of Mexico - 31_GoM_OMZ_CsCl metaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	25877
Total Scaffold Genes	42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	17 (40.48%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

25877

Total Scaffold Genes

42 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

17 (40.48%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota	(Source: Euk_MAG)

Taxonomy

All Organisms → cellular organisms → Eukaryota

(Source: Euk_MAG)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Gulf of Mexico
Coordinates	Lat. (^o)	28.867	Long. (^o)	-90.467	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

Gulf of Mexico

Coordinates

Lat. (^o)

28.867

Long. (^o)

-90.467

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001018	Metagenome / Metatranscriptome	804	Y
F002333	Metagenome	569	Y
F020341	Metagenome	224	Y
F025982	Metagenome / Metatranscriptome	199	Y
F040073	Metagenome	162	Y
F043890	Metagenome / Metatranscriptome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208018_1001341	F020341	N/A	YWVASYTKDNEDEPFAIHKKVLSYAPGQDKEFLMTKYCHSLMKLNPHVWEVLVHQGPSKTPDHGDQIVIRLSREPFKGCGQLT
Ga0208018_10013411	F002333	N/A	MSTQLQTELNAAQAAIYTCSNLGRAFQDFDDADIGGIYLRSDDCIVVRRDGSEQAYNREMIKVAYTNYTNRLKDFFSYLGPNYRGPSVWRNNAYVMFKGWNYSHALGHLTSNAKLQAHWADKFIHVSEQQKLVHLLQSDQTDLGHLVAPDGMRLTDRPIDVDSDMEDEQAPVMGEPWCSCGSYQRQLSNLSDFEAEITGFKPWCIHLSWFNKYRELLCKRTEARNASPSGTPEKCVSWWYAPPADHISDGRFVLLYTNHGAQAPLTHWRTYKPKEIFTQHDAWDLFFNMCDAGYVPFPGIALPQLKSAIKKQ
Ga0208018_10013413	F043890	N/A	MLKPSSIEKLRIEFIEEDDGSGTIHIEWDEKDPDLQWWSDLGEEGQKSFIIKALTDATKDYVD
Ga0208018_10013416	F001018	N/A	MTTQITQAKLKDLNIIKLYEHYAALEKSLPLLTPESQDLAKAELEACANLRSEKVDRIHYAMAAHEDALERIKKEGDLITQAKRHHESQLKSLKGLLNYLRRVLPLDSNKITGRNYQFTLVKKKDLTVEITSDPEFWHTEERRRYCIEETITTTKQVVLRSMSGEVLSDRTEPKTTTKVLPNLDAIRSAYQEGQQLPAGVKVIQEYSVRTKRIFGEPRMEMAPSEYPGQLLPEDSSAD
Ga0208018_10013417	F025982	N/A	MNCHEHALKDFDLQLEMNGLQMDMMMDGNQVCSYKINEYDDLEEKKLKLLLGKRFHQNAANAYWYYLQREKAAK
Ga0208018_1001349	F040073	N/A	MLQFEAGPEDMFWQEKMIRQINESTSLDEVKEIAVLLTKIATTRQIAIKGLVKDAMDLMQGQFSHQIPAQSE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208018_100134

Overview

Ecosystem & Geography

Associated Families

Sequences