Basic Information | |
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Taxon OID | 3300025057 Open in IMG/M |
Scaffold ID | Ga0208018_100468 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Gulf of Mexico - 31_GoM_OMZ_CsCl metaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 10508 |
Total Scaffold Genes | 27 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 27 (100.00%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Gulf of Mexico | |||||||
Coordinates | Lat. (o) | 28.867 | Long. (o) | -90.467 | Alt. (m) | Depth (m) | 5 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F028484 | Metagenome / Metatranscriptome | 191 | Y |
F037687 | Metagenome / Metatranscriptome | 167 | Y |
F041146 | Metagenome / Metatranscriptome | 160 | Y |
F042289 | Metagenome / Metatranscriptome | 158 | N |
F084122 | Metagenome / Metatranscriptome | 112 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0208018_10046813 | F042289 | GAGG | MIDGIFRIEEVRADECPDEFLTRVGNANVTVWRNRLADYDGKLCFSFPYISWCGDMYVAPDEPMAILVEETWEEASLDIEFDLMKKGLI |
Ga0208018_10046814 | F084122 | AGG | MFYYNVKFTNGESLVIMSDGDPVDEVPVEFQGDVIDVTTICEVSV |
Ga0208018_1004683 | F028484 | GGAGG | MSRQDGQPQIRKIGKEYYLNMFDLLDMLEAFADFSVDEFMSKDEEGLDEFECGWFEGDQARLEHLLNLFSMLIAEKRLEKIDNVEKLFQEFPSEKFIRNRGQNT |
Ga0208018_1004684 | F037687 | GGA | MIFTYDKVKNDIWEVIKDKTDFVYEPSSECDACFDHNEWEYDPEAFGDEPPTCNAHYDGDACRYFYADYRGYSNCDTPACVVGNWFVFEQFSPEDLNVSTWDVLEGQGVKTLMERANVEVSPEALEFLNNMQTFQDTGVSWGNAFEMSVAKAEGTENE |
Ga0208018_1004687 | F041146 | AGAAGG | METIHLYQIDGGYTYWEAYSDLTNNYLFSLDDDDVGDYISQNKDKDIRIYDQEPYNAMYHIHIEMDKWWGRDDYHVDDCPAIHNPQEQLDYLCEGCHAFEKWAKNKTYGDYMKDRFANV |
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